Dataset Error An error occured while running the tool toolshed.g2.bx.psu.edu/repos/devteam/realigner_target_creator/gatk_realigner_target_creator/0.0.4
Tool execution generated the following messages:
Picked up _JAVA_OPTIONS: -Djava.io.tmpdir=/galaxy-repl/main/jobdir/020/422/20422896/_job_tmp -Xmx15g -Xms256m [Mon Aug 20 04:29:24 CDT 2018] net.sf.picard.sam.CreateSequenceDictionary REFERENCE=/galaxy-repl/main/jobdir/020/422/20422896/_job_tmp/tmp-gatk-XawHqz/gatk_input.fasta OUTPUT=/galaxy-repl/main/jobdir/020/422/20422896/_job_tmp/tmp-gatk-XawHqz/dict6958918825417136237.tmp TRUNCATE_NAMES_AT_WHITESPACE=true NUM_SEQUENCES=2147483647 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false [Mon Aug 20 04:29:24 CDT 2018] Executing as g2main@roundup56.tacc.utexas.edu on Linux 3.10.0-693.21.1.el7.x86_64 amd64; Java HotSpot(TM) 64-Bit Server VM 1.7.0_40-b43; Picard version: 1.58(1057) [Mon Aug 20 04:29:24 CDT 2018] net.sf.picard.sam.CreateSequenceDictionary done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=756023296
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