4.0 years ago by
There is an open ticket to include the report information for this tool in the output, but as it is the older version, it may not be prioritized. Earlier versions of the Tophap v.1.x wrapper included the report under the "i" info icon's stderr output. However, those are no longer part of the functionality supported on the public Main Galaxy instance and the older wrapper versions may not execute as expected even on a local/cloud.
As an alternative, the Tophat2 tool reports the mapping statistics in the first output dataset created. I would suggest trying this.
Hopefully either Tophat2 will work for you, or you will be able to use the text manipulation/summary tools available in order to generate the statistics you need when using this tool version.
Best, Jen, Galaxy team