Question: WIG file from MACS2
0
gravatar for katherinedixon4
4.0 years ago by
Canada
katherinedixon410 wrote:

Hi,

I have been using MACS2 in Cistrome to call peaks from ChIP-seq data. It appears as though it's not possible to generate a wiggle file using MACS2, whereas there is an option to do so in MACS (within the Cistrome platform). I just wanted to make sure my understanding is correct?

Thank you!

cistrome macs2 • 1.7k views
ADD COMMENTlink modified 4.0 years ago by Bjoern Gruening5.0k • written 4.0 years ago by katherinedixon410
1
gravatar for Bjoern Gruening
4.0 years ago by
Bjoern Gruening5.0k
Germany
Bjoern Gruening5.0k wrote:

I'm not sure if you are talking about the recent MACS2 wrapper developed here: https://github.com/bgruening/galaxytools/tree/master/macs2

I'm not aware of that option if it still exists in MACS2 I will integrate it. Can you help me and point me to the documentation about that option?

Thanks,

Bjoern

ADD COMMENTlink written 4.0 years ago by Bjoern Gruening5.0k
0
gravatar for Jennifer Hillman Jackson
4.0 years ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

We can wait and see if the Cistrome team replies here, but they may not be active quite yet. Email them direct about questions regarding the tool behavior specific to their instance is still probably the best route. Feel free to post back there, though! 

Best, Jen, Galaxy team

ADD COMMENTlink written 4.0 years ago by Jennifer Hillman Jackson25k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 105 users visited in the last hour