Question: Cuffdiff Failed
gravatar for i b
6.4 years ago by
i b330
i b330 wrote:
Hi, I had 3 samples (2replicates treated (A-B) and one untreated (C) ). I did cufflnks and cuffmerge (all 3 cufflinks) I run cuffdiff with the following options: cuffmerge + tophats from A, B, C (2 groups: with A, B), gropu2: C. I had the following message: 0 bytes An error occurred running this job: cuffdiff v1.3.0 (3022) cuffdiff --no-update-check -q -p 8 -c 10 --FDR 0.050000 -N -b /galaxy/data/hg19/sam_index/hg19.fa --labels + /galaxy/main_pool/pool4/files/004/645/dataset_4645857.dat /galaxy/main_pool/pool3/files/004/623/dataset_4623286.dat,/galaxy Where did I do wrong? What does it mean? Cheers, ib
rna-seq cuffmerge cufflinks • 853 views
ADD COMMENTlink modified 6.4 years ago by Jennifer Hillman Jackson25k • written 6.4 years ago by i b330
gravatar for Jennifer Hillman Jackson
6.4 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hello Irene, There appears to be a problem with the information entered into the tool form for the labels (e.g. "Group name"). The command string only shows one group label value when there are two group data sets. You submitted a bug report for this same issue, so I will take a look there at the exact error (usually is very specific about problem) and at the exact settings entered into tool form and provide feedback there. Thanks, Jen Galaxy team -- Jennifer Jackson
ADD COMMENTlink written 6.4 years ago by Jennifer Hillman Jackson25k
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