Question: How to get all possible group pairings in cuffdiff- Main
4.4 years ago by
edoade_2014 • 30
edoade_2014 • 30 wrote:
I have 4 samples and followed the tophat, cufflinks, cuffmerge and cuffdiff workflow. I merged the assembled transcripts (cufflinks) of all samples in cuffmerge and imported the merged gtf in cuffdiff flagging the 4 different conditions each with replicates. The analysis has been done in Main, the problem is that cuffdiff gave me only the pairwise comparison of 2 groups out of 4. How can I have all possible group pairings with cuffdiff in galaxy Main?
ADD COMMENT • link •modified 4.4 years ago • written 4.4 years ago by edoade_2014 • 30