Question: Help with LEfSe
1
gravatar for solnikh
4.3 years ago by
solnikh10
Israel
solnikh10 wrote:

I'm using the LEfSe algorithm, however I have some difficulties.

How come I succeeded line C (plot LEfSe Results) but I'm getting an  error message in line F (plot differential features)?

The error message I get : Traceback (most recent call last): File "/home/usr/local/shed_tools/testtoolshed.g2.bx.psu.edu/repos/george-weingart/lefse/394983afb1ee/lefse/plot_features.py", line 143, in features = read_data(params['input_file_1'],params['input_file_2'

 

galaxy • 1.3k views
ADD COMMENTlink written 4.3 years ago by solnikh10
1
gravatar for Bjoern Gruening
4.3 years ago by
Bjoern Gruening5.1k
Germany
Bjoern Gruening5.1k wrote:

Can you please post the complete error message? Also that tool is not part of the Main Galaxy repository. It is developed by the community. Please try to contact the tool author and ask for help if you can not fix it.

Cheers,

Bjoern

ADD COMMENTlink written 4.3 years ago by Bjoern Gruening5.1k
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