Dear all,
I've been trying to install tools on my brand new CloudMan Galaxy instance using toolshed. I am trying to install Fastq Groomer and I am getting errors related to galaxy_sequence_utils. Am'I doing something wrong? Here is the error log from that dependency from the admin tool management panel:
Downloading http://pypi.python.org/packages/source/d/distribute/distribute-0.6.38.tar.gz
Extracting in /mnt/galaxy/tmp/tmpEGkh_V
Now working in /mnt/galaxy/tmp/tmpEGkh_V/distribute-0.6.38
Building a Distribute egg in /mnt/galaxy/tmp/tmp-toolshed-mtd63TIJa/galaxy_sequence_utils-1.0.0
/mnt/galaxy/tmp/tmp-toolshed-mtd63TIJa/galaxy_sequence_utils-1.0.0/distribute-0.6.38-py2.7.egg
error: /usr/local/lib/python2.7/dist-packages/distribute-0.7.3-py2.7.egg/site.py: No such file or directory
Thanks a bunch
How did you launch this CloudMan instance? I've just launched a new one and have installed Fastq Groomer successfully without seeing this issue.
Same for me... Still trying to figure out what's wrong with the other instance...
One issue though... I was unable to specify a new panel section on either the new or the old instances. For examples, I couldn't put the bedtools in a bedtools section, everything appear at the end of the menu (also, I couldn't figure out the XML config file (or else) specifying where these should be located (weird because I was able to add the NGS.plot tool to the tools_config.xml and have them display correctly...) I must be missing how the side panel is fully populated...
Just let me know if you have a sense if what's going on (I'm going through the different tools that need update right now hopping to fix the initial issue)
Thanks