Are you working at http://usegalaxy.org? I just checked and it is
there. Please give this another look.
On "Get Data -> Upload File" tool:
Under "Edit Attributes" (found by clicking on a dataset's pencil
The examples below are labeled by the tool/user interface location
the two menus are located. Which tool are you using under "Get Data"?
Perhaps "UCSC Main"?
Any tool other than "Upload File" accesses an external data source and
the available data can vary. It is important to know that the data
content included on externally hosted sites is managed by that sites
owners. If you are using "Get Data -> UCSC Main", then you are correct
in that they do not provide data for this genome, just the ones you
When you do locate data for this species that you wish you use (try
searching for "Tribolium castaneum" with the tool " EBI SRA ENA SRA"),
and import it, the Galaxy locally cached reference genome for Tcas_3.0
is available with several, but not all, mapping tools. It is likely to
be added to Bowtie2/Tophat2 sometime in the future.