Question: Output File To History
0
Sebastian Luna Valero • 10 wrote:
Dear All,
I am trying to add a new tool in Galaxy and I have the following
problem.
Let me explain a simplified example. Let's imagine that my script
works
from CLI as follows:
python script.py --input "input-file" --pattern "output-pattern"
After processing "input-file", the script writes several output files
and
their name is given according to "output-pattern".
The number of output files depends on the content of "input-file". The
output files are written to the current working directory where
script.py
is located.
In the simplest scenario, I get only one output file in the working
directory.
My problem is that I would like to see the output files in Galaxy's
history
without modifying the CLI interface.
To solve this problem, I have looked at the wiki page:
https://wiki.galaxyproject.org/Admin/Tools/Multiple%20Output%20Files#N
umber_of_Output_datasets_cannot_be_determined_until_tool_run
and the email here:
http://dev.list.galaxyproject.org/Multiple-output-files-do-not-appear-
in-history-td4660470.html
However, I think that mine is a different scenario. I do not want to
add
new output parameters in the CLI. I would like Galaxy to bring these
output
files to my history without modifying the CLI options, is that
possible?
Many thanks in advance for your help!
Best regards,
Sebastian.
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modified 4.7 years ago
by
Jennifer Hillman Jackson ♦ 25k
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written
4.7 years ago by
Sebastian Luna Valero • 10
