Question: Output File To History
gravatar for Sebastian Luna Valero
4.7 years ago by
Sebastian Luna Valero10 wrote:
Dear All, I am trying to add a new tool in Galaxy and I have the following problem. Let me explain a simplified example. Let's imagine that my script works from CLI as follows: python --input "input-file" --pattern "output-pattern" After processing "input-file", the script writes several output files and their name is given according to "output-pattern". The number of output files depends on the content of "input-file". The output files are written to the current working directory where is located. In the simplest scenario, I get only one output file in the working directory. My problem is that I would like to see the output files in Galaxy's history without modifying the CLI interface. To solve this problem, I have looked at the wiki page: umber_of_Output_datasets_cannot_be_determined_until_tool_run and the email here: in-history-td4660470.html However, I think that mine is a different scenario. I do not want to add new output parameters in the CLI. I would like Galaxy to bring these output files to my history without modifying the CLI options, is that possible? Many thanks in advance for your help! Best regards, Sebastian.
galaxy • 914 views
ADD COMMENTlink modified 4.7 years ago by Jennifer Hillman Jackson25k • written 4.7 years ago by Sebastian Luna Valero10
gravatar for Jennifer Hillman Jackson
4.7 years ago by
United States
Jennifer Hillman Jackson25k wrote:
This question was moved to the mailing list for discussion: td4663879.html Jen Galaxy team -- Jennifer Hillman-Jackson
ADD COMMENTlink written 4.7 years ago by Jennifer Hillman Jackson25k
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