Question: Converting Vcf To Gd_Genotype
gravatar for Mike Montague
4.8 years ago by
Mike Montague10 wrote:
I'm interested in using the Genomic Diversity tools. I've used these with success for a previous project. For this current project, I've converted a vcf file (29 subjects) to a gd_genotype file. When I attempt to specify individuals, the checkboxes for each subject are not present. Without specifying individuals, I am unable to complete other analyses (overall FST, etc.) I cannot distinguish a difference between the vcf files that were successful from the previous project and this current project's vcf, but I assume there is a format difference that I cannot detect. I'm using Galaxy at the main site. I executed the jobs on Fri Feb 21 22:09:49 2014 (UTC). I can share the histories of the projects if necessary. Mike -- ____________ Michael J. Montague, Ph.D. Post-Doctoral Research Associate The Genome Institute, Washington University School of Medicine 4444 Forest Park Avenue, Campus Box 8501 St. Louis, MO 63108 T. 718.809.4093 ____ This email message is a private communication. The information transmitted, including attachments, is intended only for the person or entity to which it is addressed and may contain confidential, privileged, and/or proprietary material. Any review, duplication, retransmission, distribution, or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipient is unauthorized by the sender and is prohibited. If you have received this message in error, please contact the sender immediately by return email and delete the original message from all computer systems. Thank you.
galaxy • 834 views
ADD COMMENTlink modified 4.8 years ago by Jennifer Hillman Jackson25k • written 4.8 years ago by Mike Montague10
gravatar for Jennifer Hillman Jackson
4.8 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hello Mike, Yes, we have similar recent reports of issues with tools from this group and are actively investigating the root cause. It is unknown whether or not python version is related, but right now we are tracking the issues under a single ticket with that as a suspected contributing factor. You can follow this ticket, and any tickets that branch from it, here: Our apologies for the current inconvenience, Jen Galaxy team -- Jennifer Hillman-Jackson
ADD COMMENTlink written 4.8 years ago by Jennifer Hillman Jackson25k
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