Question: Inconsistent Bam-To-Sam Behavior
0
Michael Mason • 10 wrote:
Hi,
I have run some top hap output through the samtools BAM-to-SAM
wrapper. It creates the SAM file about 50% of the time. The rest of
the time it makes an empty file. In this case if I just rerun it often
works. I was wondering if anyone else has seen this behavior. I am
using a cloud server and think I might need to change some settings.
This causes my workflow to fail for many libraries so I also
interested in any workarounds anyone has figured out.
Thanks in advance for any help.
Cheers
Mike
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modified 5.0 years ago
by
Jennifer Hillman Jackson ♦ 25k
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written
5.0 years ago by
Michael Mason • 10
