Question: Inconsistent Bam-To-Sam Behavior
gravatar for Michael Mason
5.0 years ago by
Michael Mason10 wrote:
Hi, I have run some top hap output through the samtools BAM-to-SAM wrapper. It creates the SAM file about 50% of the time. The rest of the time it makes an empty file. In this case if I just rerun it often works. I was wondering if anyone else has seen this behavior. I am using a cloud server and think I might need to change some settings. This causes my workflow to fail for many libraries so I also interested in any workarounds anyone has figured out. Thanks in advance for any help. Cheers Mike ________________________________ --CONFIDENTIALITY NOTICE--: The information contained in this email is intended for the exclusive use of the addressee and may contain confidential information. If you are not the intended recipient, you are hereby notified that any form of dissemination of this communication is strictly prohibited.
samtools bam • 704 views
ADD COMMENTlink modified 5.0 years ago by Jennifer Hillman Jackson25k • written 5.0 years ago by Michael Mason10
gravatar for Jennifer Hillman Jackson
5.0 years ago by
United States
Jennifer Hillman Jackson25k wrote:
ADD COMMENTlink written 5.0 years ago by Jennifer Hillman Jackson25k
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