Question: Problem Running Augustus
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gravatar for Claudio Slamovits
4.8 years ago by
Claudio Slamovits10 wrote:
Hello, I am trying to use the genome Annotation tool Augustus on my locally installed copy of Galaxy. After loading the data file, all analyses stop and deliver the following: error an error occurred with this dataset: /bin/sh:1:augustus: not found python: can't open file: '/extract_features.py': [Errno 2] No such file or directory Python is installed on my system (Ubuntu 12.04, Python 2.7.3) It must be something very basic I'm missing, but more basic are my linux skills… Thanks a lot Claudio ~^~^~^~^~^~^~^~^~^~^~^~^~^~^~^~^~^~^~^ Claudio Slamovits, Canadian Institute for Advanced Research Department of Biochemistry and Molecular Biology Dalhousie University 5850 College Street, Halifax, Nova Scotia B3H 4R2, Canada Lab Webpage: http://slamo.biochem.dal.ca Lab: (902) 494 7894 Office: (902) 494 8825 Fax: (902) 494 1355 ^~^~^~^~^~^~^~^~^~^~^~^~^~^~^~^~^~^~^~ "Reality is what it is, not what you want it to be." - Frank Zappa
galaxy • 984 views
ADD COMMENTlink modified 4.8 years ago by Björn Grüning350 • written 4.8 years ago by Claudio Slamovits10
0
gravatar for Bjoern Gruening
4.8 years ago by
Bjoern Gruening5.1k
Germany
Bjoern Gruening5.1k wrote:
Hi Claudio, I will have a look at it, at latest tomorrow, promised. Cheers, Bjoern (Augustus wrapper developer)
ADD COMMENTlink written 4.8 years ago by Bjoern Gruening5.1k
0
gravatar for Björn Grüning
4.8 years ago by
Björn Grüning350 wrote:
Hi Claudio, did you installed Augustus with the ToolShed? The env variable $AUGUSTUS_SCRIPT_PATH need to be set and point to the augustus wrapper folder containing the extract_features.py script. Hope that helps! Bjoern
ADD COMMENTlink written 4.8 years ago by Björn Grüning350
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