Similar posts • Search »

• NGS mapping via Bowtie on paired end trimmed files is failing
  Hi Galaxy support, I have ran paired end files for a staphylococcus aureus genome (Illumina Mis...
• TopHat Error Occurred with Dataset
  Hello!  I am attempting to map solid colorspace data with galaxy.  I am running the pipeline as f...
• Enhanced bowtie mapper
  Hi all, I use tool called 'Enhanced Bowtie Mapper', and want to map my input file which is FASTQ...
• Output files: "genome.*.bt2" file. What is it?
  Hi everyone, I ran Bowtie2, mapping my MiSeq reads against a plasmid (8kb) I had to find out if ...
• error tool Bowtie2
  Goodmornig, I have a problem with Galaxy, I am using Bowtie2 tool and the output at the end of a...
• Aligning S. aureus reads to a reference genome
  Dear colleagues, I am currently trying to aligning reads from a dual RNA-seq experiment to the S...
• Hisat error: 'NoneType' object has no attribute 'file_name'
  Hi, I create a workflow using local galaxy. PE RNA-Seq data after trimming are mapped against ge...
• Reference genome build (hg19 installation)
  Hi guys. So I basically deposited my data (hg19 , .bam format) onto my local server and when i n...
• Tophat Mapping And Cufflinks Output Issues
  Hello Galaxy Users- I've been using the Main Galaxy server to work on an RNA-Seq project for a n...
• Error for running Tophat in GALAXY
  Hello, I was trying to use Tophat of GALAXY (run by my university) to perform mapping of my RNA-S...
• TopHat: Error: Couldn't build bowtie index with err = 1
  Hi I'm trying to run TopHat on a Cloudman Galaxy instance and I keep getting the below error. I'...
• Fastqc In Main Galaxy Server?
  Hi, I've tried FastQC in the main galaxy server and it is throwing me an error: 0 bytes An erro...
• FTP upload is crashing with large files (3GB)
  Anyone had trouble uploading large files to galaxy FTP? It is my first time, I am trying to uploa...
• Cuffdiff Fatal error: Exit code 1 () Error: number of labels must match number of conditions number of labels must match number of conditions
  Hi! I ran into a problem using Cuffdiff. (I am using a local version of galaxy). When I try to ...
• Generate Pileup Not Working?
  Hi, I am trying to do variants call with "generate pileup". My steps where: 1. BWA 2. select only...
• local toolshed + install attempt = stream ended unexpectedly
  tool_shed.util.repository_dependency_util DEBUG 2014-06-17 21:52:59,928 Building repository depen...
• Galaxy production server virtualenv
  > I might have found a solution: https://github.com/galaxyproject/galaxy-hub/pull/309 I am tr...
• RSEM "Unable to finish job" but output data seem to be OK
  Hi there I am working on a local instance of Galaxy constructed from the docker image galaxy-sta...
• Can't Rsync bacterial genomes
  Hi everyone, I have a local instance of Galaxy. I am trying to grab some of the reference genome...