Question: More Help Neeeded
0
Kshama Aswath • 20 wrote:
Hello ,
I tried everything possible according to the reply I got from Jen ,
helping
me fix my problem but is not working.Please see below .
Is it possible that because the usage shows 91% I am not able to
retrieve
anything back to display? Might sound ridiculous but
have no clue !! I still have no output back and none of the hidden
datasets
or deleted datasets are showing so I can purge them.
When I chose the "purge deleted datasets" from the gear icon , I got
back a
message indicating "0 datasets purged". Please hlep as this is
tremendously
delaying my analysis process.
I have answered some of the steps Jen asked me to take ,please see
below:
here is what Jen wrote to help me with my problem on galaxy :
We would like to help. I looked for an account under your email
address
"kaswath@masonlive.gmu.edu" on the public Main Galaxy instance at
http://main.g2.bx.psu.edu (http://usegalaxy.org), and did not find
one,
so I will tell you how to check for the data yourself, then you can
share your account email address if you are still stuck.
I am registered under compugene@gmail.com, that is why u could not
find me
on my school ID.
1 - For unexplained data counting towards your quota: Check for
datasets
in histories that are deleted, but not permanently deleted. Inside a
history, select "Options (gear icon) -> View Deleted Datasets" to
bring
up those that were deleted. Each will note if permanently deleted or
not
and give the option to purge.
I tried this and it did not show the deleted datasets
Also check for complete histories that may be deleted, but also not
permanently deleted (or purged). Select "Options (gear icon) -> Saved
Histories", then view "all" to see active and deleted. The table will
note if the data is deleted, but not purged. The option to
purge/permanently delete will also be given.
The show all option showed what I currenlty have bt not the deleted
datasets
2 - To locate the output of workflow that seems to be missing: Check
for
hidden datasets. From within a history (the history that launched the
job, if no other history was created), select "Options (gear icon) ->
View Hidden Datasets" to bring up those that were hidden by the
workflow. (Hiding intermediate datasets is a workflow option). Perhaps
there was an error early on in the workflow, before the stage where a
result would be written to a new history. I would also recommended
that
you experiment with a test run where the output is not written to a
new
history (if you have not already done so), just to rule out any
problems
central to the workflow (or the inputs), independent of the new
history
issue.
Tried this but the hidden datasets did not show up !
Help is also in this wiki:
http://wiki.g2.bx.psu.edu/Learn/Managing%20Datasets
See Hidden & Delete_vs_Delete_Permanently
Hopefully this helps, but please let us know if you need more
assistance,
Jen
Galaxy team
--
Jennifer Jackson
http://galaxyproject.org
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Kshama Aswath
Graduate Student-(PhD)
Bioinformatics and computational Biology
Prince Williams Campus
George Mason University
Manasses,VA-20110
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modified 6.1 years ago
by
Jennifer Hillman Jackson ♦ 25k
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written
6.1 years ago by
Kshama Aswath • 20