Question: Complete Genomics Cga Tools™� In Galaxy
0
Birgit Crain • 10 wrote:
Dear Community Members
Complete Genomics, Inc<http: www.completegenomics.com=""/>. is happy to
announce the release of a CGA Tools implementation in Galaxy. CGA
Tools is an open source project<http: cgatools.sourceforge.net=""/>
to provide tools for downstream analysis of Complete Genomics Whole
Genome Sequencing data. This first release includes the most commonly
used functions of CGA Tools such as listvariants, testvariants,
calldiff, snpdiff, junctiondiff, join and varfilter. Ongoing
development will add other functions of CGA Tools, which were not
part of this release, and a variety of data analysis workflows.
There are two repositories available for download from the Galaxy
Tools Shed<http: toolshed.g2.bx.psu.edu=""/>: a linux version,
cg_cgatools_linux, and a Mac OSX version, cg_cgatools_mac_osx. Both
repositories are bundled with the latest version of CGA Tools
(1.5.0.31) for the respective operating system and contain
instructions for automated and manual installation of the tools, as
well as instructions for the download and installation of reference
genome files.
Please reply to this post with any comments to this release and
suggestions for future development, or contact us at
ProfServ@completegenomics.com<mailto:profserv@completegenomics.com>
Best regards
Birgit Crain, Ph.D. | Sr. Professional Services Scientist | Complete
Genomics, Inc.
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