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Question: Gatk Tools: Other Genome Available?
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gravatar for Jean JAUBERT
6.6 years ago by
Jean JAUBERT • 10
Jean JAUBERT • 10 wrote:
Hi, The NGS: GATK Tools on main are so far only for human genome. Do you have an idea when other genomes (such as my favorite, i.e mice and mm9) would be accessible ? Otherwise, is there a way to easily transfer "mm9 genome that is system-installed on main" directly in a "Custom build genome" that could be used in such a case ? Or is this a bad idea ? Thanks for your help, Best. Jean Jaubert
gatk • 1.2k views
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modified 6.6 years ago by Jennifer Hillman Jackson ♦ 25k • written 6.6 years ago by Jean JAUBERT • 10
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gravatar for Jennifer Hillman Jackson
6.6 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:
Hello Jean, There is no method for transferring existing genomes/indexes to user histories. This tool set is brand-new on the public server and is released as beta. In the near-term, more genomes will be indexed and added, but for now, using a Custom reference genomes is the available option. http://wiki.g2.bx.psu.edu/Support#Custom_reference_genome mm9 comes from UCSC and is available from their downloads server at: http://hgdownload.cse.ucsc.edu/goldenPath/mm9/ If you need help navigating, UCSC's help is at: http://genome.ucsc.edu/contacts.html Best, Jen Galaxy team -- Jennifer Jackson http://galaxyproject.org
ADD COMMENT • link written 6.6 years ago by Jennifer Hillman Jackson ♦ 25k
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