Question: [Patch] Much More Efficient Fasta Tools
gravatar for James Casbon
9.9 years ago by
James Casbon370
James Casbon370 wrote:
Hi everyone, I got bored waiting around for the fasta tools to finish so I improved the length filter and fasta to tabular scripts. On a reasonable data set these were taking over ten minutes with the old version. With this version its a few seconds. The improvement comes from not reformatting the data, caching it in memory or building a hash. All of these are unnecessary for these tasks IMO. cheers, James
ADD COMMENTlink written 9.9 years ago by James Casbon370
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 143 users visited in the last hour