Question: [Patch] Much More Efficient Fasta Tools
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gravatar for James Casbon
9.7 years ago by
James Casbon370
James Casbon370 wrote:
Hi everyone, I got bored waiting around for the fasta tools to finish so I improved the length filter and fasta to tabular scripts. On a reasonable data set these were taking over ten minutes with the old version. With this version its a few seconds. The improvement comes from not reformatting the data, caching it in memory or building a hash. All of these are unnecessary for these tasks IMO. cheers, James
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