Re: Velvetoptimizer On Galaxy Toolshed

Heads up! This is a static archive of our support site. Please go to help.galaxyproject.org if you want to reach the Galaxy community. If you want to search this archive visit the Galaxy Hub search

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Forum

Planet

All »

Home

Welcome to Galaxy Biostar! User support for Galaxy! about • faq • rss

Community

Log In

Sign Up

Add New Post

Question: Re: Velvetoptimizer On Galaxy Toolshed

6.8 years ago by

Peter Cock • 1.4k

European Union

Peter Cock • 1.4k wrote:

[Original email question was not copied to BioStars...]

The idea is that tools on the ToolShed can be added to a Galaxy Server by one of the server's administrators. This is not something a Galaxy User can take advantage of directly. Many groups or institutes run their own Galaxy, typically on a Linux server connected to a cluster. If you have access to a local Galaxy, talk to the people who run it. Note you can run Galaxy on your own Linux/Mac computer, but it wouldn't be recommended unless you want to develop for Galaxy.

Peter

velvet • 646 views

ADD COMMENT • link •

modified 4.6 years ago • written 6.8 years ago by Peter Cock • 1.4k

6.8 years ago by

Greg Von Kuster ♦ 810

Penn State University

Greg Von Kuster ♦ 810 wrote:

If you or your Galaxy admin are planning to install tool shed repositories, you should read the tool shed wiki at the following link. http://wiki.g2.bx.psu.edu/Tool%20Shed The following section describes installation of repositories into you local Galaxy instance. http://wiki.g2.bx.psu.edu/Tool%20Shed#Automatic_installation_of_Galaxy _tool_shed_repository_tools_into_a_local_Galaxy_instance You my need to install 3rd party dependencies for some tools. Greg Von Kuster

ADD COMMENT • link written 6.8 years ago by Greg Von Kuster ♦ 810

Please log in to add an answer.

Similar posts • Search »