Question: How To Find Out Snps And Point Mutations In Rna-Seq Data Using Galaxy?
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ericliaowei@gmail.com • 70 wrote:
HI,
I am new to the RNA-seq, and the only available sources for me to do
analysis is the Galaxy server. I want find out SNP and point mutations
in RNA-Seq data using Galaxy (I do not know if anyone using RNA-seq
data to find point mutations, because there is whole Genome sequencing
for reporting mutations and SNPs). I have been searching in the forum
for a step-by-step protocols for doing it, but could not find it.
I have one normal sample and two cancer samples, a TopHat produced
"accepted Hits.bam" file for each one.
I want to find out SNP and point mutations in the cancer samples, so
How do I go from here? Can anyone show me how to do it in Galaxy main
server?
Thanks!
Wei
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modified 6.9 years ago
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Jeremy Goecks • 2.2k
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6.9 years ago by
ericliaowei@gmail.com • 70
