Similar posts • Search »

• RNASEQ, lncRNA, SNV
  Hi, I have RNA-Seq data and want to analyze lncRNA, SNV, and SNP from this data through Galaxy...
• RNASEQ, lncRNA, SNV
  Hi, I have RNA-Seq data and want to analyze lncRNA, SNV, and SNP from this data through Galaxy...
• SNP data for population structure analysis
  Hi. How can I create the gd_ped file needed for population structure analysis (PCA, population co...
• Flanking regions from SNP list
  Hello  Using the RNA seq data and have performed de novo assembly with non-model species. I have...
• SNP names not lining up with VCF data and locations
  Analysis of my SNP names obtained from UCSC Main with the locations of my VCF data shows that the...
• How To Find Out Snps And Point Mutations In Rna-Seq Data Using Galaxy?
  HI, I am new to the RNA-seq, and the only available sources for me to do analysis is the Galaxy s...
• Regrading Snps
  I wish to compare SNPs in my mouse sample (SNP file generated from Partek Genomic suite) with SNP...
• Filtering on tabular dataset from vcf
  Hello, I tab delimited a vcf file so that I could filter on the 'type' information, which was in...
• Dealing with rows in tabular data
  Hello Experts I am using use galaxy for genome wide SNP discovery. I have discovered about 770,0...
• How To Extract Geneid From Pileup File?
  Dear galaxy-users, I am working on a project to identify and genotype SNPs in targeted genes. ...
• How to add flanking sequences to SNPs from vcf files
  Hej, I posted this question in Biostars nad would like to shift this post here to biostars galax...
• difference between MPileup multi-way pileup of variants and Generate pileup from BAM dataset
  hello everobody , in my project , i have to detect the variants (SNP and indels) in my genome se...
• Calling Snp
  Hi everyone, I'ha a dataset from a sample in Illumina format. I've already groomed the file and a...
• Mpileup SNP calling
  Hello I have used SAMtools Version=1.2+htslib-1.2.1 for SNP calling (History option 66 in Trinit...
• Help with SNP to Gene mapping
  Hi, I am new to the domain of bioinformatics and am looking to use computational methods on some...
• SNP Check for homozygous and heterozygous
  I have 256 Recombinant Inbred Lines (RILS) in F7 generation. I have VCF files for RILS, mother an...
• Counting number of times multiple defined values appear in the dataset
  I have gotten SNP data on a number of regions via UCSC genome browser. I have assigned all SNPs w...
• Transpose For Tab-Delimited File?
  hi there! i'm very new to galaxy and it looks very cool. short version of my question: is ther...
• Question About Aachange Tool.
  Hello, Recently i have used galaxy to find corresponding amino acids to a list of SNPs that i hav...
• snp detection for sra files
  hello i need an urgent help i want to detect snp for sra files i did bwa and convert the file i...
• How to classify the variants into different groups?
  Hello, This is my first time using galaxy. I ran Free Bayes to detect the variants of a data set ...
• Galaxy Query
  Hello, If I was to choose the following search criteria Group:all tracks, track:SNP, region: c...