Xgrid And Galaxy

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Question: Xgrid And Galaxy

7.3 years ago by

Paul Cantalupo • 20

Paul Cantalupo • 20 wrote:

Hello, I'm trying to determine if Galaxy will work with Xgrid to set up a small cluster of Mac's for next-gen sequencing projects. I saw on http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Production%20Server that Galaxy supports Torque PBS or Sun Grid. I don't think that Sun Grid runs on Snow Leopard and I don't know about Torque. Snow Leopard already comes with Xgrid so I was hoping to use it. Thank you for your help, Paul Cantalupo University of Pittsburgh

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modified 7.3 years ago by Roman Valls • 130 • written 7.3 years ago by Paul Cantalupo • 20

7.3 years ago by

Roman Valls • 130

Roman Valls • 130 wrote:

I'm no expert on MacOS but since Xgrid seems to have an opensource DRMAA implementation, it *might* be possible (with some integration/programming efforts): http://edbaskerville.com/2006/08/22/xgriddrmaa-011-with-examples/ This blog author might help you if you run into issues.. Hope that helps !

ADD COMMENT • link written 7.3 years ago by Roman Valls • 130

Hi Paul, If you manage to get Xgrid working with galaxy, please share your success, as I would love to try it. But know that you can use SGE on Mac OS X. I was able to get it working by following this blog post and screencast: http://www.bioteam.net/2010/02/grid-engine-6-2-on-mac-os-x/ I tried to compile SGE by myself, but couldn't, so I used this binaries: http://biote.am/sge/ --Carlos

ADD REPLY • link written 7.3 years ago by Carlos Borroto • 390

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