Question: Number of sequence reads
1
gravatar for cjain
4 days ago by
cjain • 10
cjain • 10 wrote:

Is there a simple way to determine the number of sequence reads in a file uploaded on Galaxy and also in the output file after Bowtie alignment.

Thanks,

Chaitanya

rna-seq • 35 views
ADD COMMENT • link • modified 4 days ago by Flow • 100 • written 4 days ago by cjain • 10
2
gravatar for Flow
4 days ago by
Flow • 100
Flow • 100 wrote:

There are different ways to do it. One simple path is to use FastQC; the number of sequences are written in the basic statistics. You can use FastQC also for the bam files in Galaxy.

ADD COMMENT • link modified 4 days ago • written 4 days ago by Flow • 100
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