Question: fastq to fasta error
gravatar for komalgadhiya93
11 weeks ago by
komalgadhiya930 wrote:

when i am running the command fastq_to_fasta. it was showing the error fastq_to_fasta: Error: invalid quality score data on line 13878876 (quality_tok = "" Please suggest the solution to resolve this issue.

error fastq fasta galaxy content • 90 views
ADD COMMENTlink modified 11 weeks ago by Jennifer Hillman Jackson25k • written 11 weeks ago by komalgadhiya930
gravatar for Jennifer Hillman Jackson
11 weeks ago by
United States
Jennifer Hillman Jackson25k wrote:


Problems like this usually indicate that the fastq data was not completely uploaded.

Try using FTP, ensure a full upload, and try the conversion tool again. If the problem persists after that, check your fastq data locally - it may have been truncated during an upstream data transfer.


  • Loading Data
  • My job ended with an error. What can I do?

Thanks! Jen, Galaxy team

ADD COMMENTlink written 11 weeks ago by Jennifer Hillman Jackson25k
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