Question: cufflinks on Rna -seq data not working
gravatar for istiaqarif
17 months ago by
istiaqarif0 wrote:

every time i am trying .. processing doesn't go along it stops.. After several time refreshing it gives an error

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cufflinks • 580 views
ADD COMMENTlink modified 17 months ago by Jennifer Hillman Jackson25k • written 17 months ago by istiaqarif0

Describe your steps in more detail. I had other problems with cufflinks like producing FPKMs all zero, but at least it ran.

ADD REPLYlink written 17 months ago by apozhitkov60

It takes a fair bit of time, but at least for me cufflinks jobs do start on

ADD REPLYlink written 17 months ago by Devon Ryan1.9k
gravatar for Jennifer Hillman Jackson
17 months ago by
United States
Jennifer Hillman Jackson25k wrote:


There were some recent cluster issues. Please rerun the job now. It may queue for a bit due to many others also having job delays (this is what a "gray" job indicates - a job is queued and should be allowed to stay queued until processed). Please see this answer for more about queued data:

If errors continue (red result dataset), please see this answer for how to diagnose input problems and get more help if needed:

Reporting tool problems with a bug report (after inputs are confirmed to be OK) is also a way for us to learn about corner case tool issues. However, please check your data and rerun first. When reporting a bug (true for everyone), be sure to leave all inputs and outputs undeleted and include a link to the related Biostars post if one has been made.

Thanks! Jen, Galaxy team

ADD COMMENTlink written 17 months ago by Jennifer Hillman Jackson25k
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