Question: T to C mutations in PAR-CLIP
gravatar for cjain
3 months ago by
cjain10 wrote:


I am looking for a way to quantify T to C changes on my PAR-CLIP data. Tools such as Naive Variant Caller also can yield this information, but they generate data for all different types of changes. As a non-expert, I am downloading the data into Excel, but the complicated nature of the output in Naive Variant Caller makes it difficult to specifically extract the T to C changes. Is there way that that one can more simply output only specified variants?



variants par-clip • 138 views
ADD COMMENTlink modified 3 months ago by Jennifer Hillman Jackson25k • written 3 months ago by cjain10
gravatar for Jennifer Hillman Jackson
3 months ago by
United States
Jennifer Hillman Jackson25k wrote:


To parse VCF datasets output by the NVC tool, use the tool Variant Annotator process variant counts (Galaxy Version 1.2).

Thanks! Jen, Galaxy team

ADD COMMENTlink written 3 months ago by Jennifer Hillman Jackson25k
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