Question: T to C mutations in PAR-CLIP
gravatar for cjain
8 weeks ago by
cjain0 wrote:


I am looking for a way to quantify T to C changes on my PAR-CLIP data. Tools such as Naive Variant Caller also can yield this information, but they generate data for all different types of changes. As a non-expert, I am downloading the data into Excel, but the complicated nature of the output in Naive Variant Caller makes it difficult to specifically extract the T to C changes. Is there way that that one can more simply output only specified variants?



variants par-clip • 90 views
ADD COMMENTlink modified 8 weeks ago by Jennifer Hillman Jackson25k • written 8 weeks ago by cjain0
gravatar for Jennifer Hillman Jackson
8 weeks ago by
United States
Jennifer Hillman Jackson25k wrote:


To parse VCF datasets output by the NVC tool, use the tool Variant Annotator process variant counts (Galaxy Version 1.2).

Thanks! Jen, Galaxy team

ADD COMMENTlink written 8 weeks ago by Jennifer Hillman Jackson25k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 151 users visited in the last hour