Question: Problems loading/using custom genome dataset for Hisat analysis
0
gravatar for p_solorzano77
5 months ago by
p_solorzano770 wrote:

Hi,

I am trying to load from ENA the genome dataset of Carnegiea gigantea into HiSAT2 analysis for annotation of a Hylocereus transcriptome. I uploaded the reference genome PRJNA318822 into Galaxy but it is still not available as a choosable genome from my history profile. The only issue I noticed is that the file format is fast.q.gz. Could that be the issue? I am using the latest HISAT2 version.

Best regards,

Paúl.

build genome galaxy custom • 163 views
ADD COMMENTlink modified 5 months ago by Jennifer Hillman Jackson25k • written 5 months ago by p_solorzano770
0
gravatar for Jennifer Hillman Jackson
5 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

The data needs to be loaded in fasta format and assigned to that datatype.

Please see this support FAQ for full details: https://galaxyproject.org/support/

Thanks! Jen, Galaxy team

ADD COMMENTlink written 5 months ago by Jennifer Hillman Jackson25k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 161 users visited in the last hour