I am trying to run a utility called transrate to assess my trinity assembled files. I am trying to use my trimmed files (trimmomatic files downloaded from galaxy) that are in fastqsanger format but when they are downloaded it seems to be just edited text documents and not any type of sequence file. Can someone help me? Is this a problem with the download from galaxy?
It sounds like there was a problem downloading the Trimmomatic fastq data.
For smaller files, you can just click on the disc icon. For larger data, use
wget with the dataset's URL (copied from the disc icon).
- Downloading Data https://galaxyproject.org/support/download-data/
If that doesn't help, please explain how you are downloading the data, if other files download oddly or just this one, and which Galaxy server you are working on.
Thanks! Jen, Galaxy team