I have RNA Seq data from two conditions using a non-model organism. I constructed a trinity assembly from this and then used Salmon to get read counts from both conditions (three replicates). Now I want to find the significant differences, by when I run DESeq2 I get the following error:
Fatal error: An undefined error occurred, please check your input carefully and contact your administrator. Error in scan(file = file, what = what, sep = sep, quote = quote, dec = dec, : line 1 did not have 11 elements Calls: read.table -> scan
Can I make the tabular file requested from the trinity assembly? I tried the fasta to tabular converter but this did not help.