Hi, I was trying to run DESeq2 but some error is happening:
Error in summarizeToGene(txi, tx2gene, ignoreTxVersion, countsFromAbundance) :
None of the transcripts in the quantification files are present in the first column of tx2gene. Check to see that you are using the same annotation for both.
Would anyone know what transcripts annotation the DESeq2 from galaxy uses in the gene name?? I was trying with refGene and UCSC and both could'nt run.