Question: Visualisation of Fastqc charts
gravatar for jaswanth.p
9 months ago by
jaswanth.p0 wrote:

Requesting to let me know the plugin to be installed to visualize fastqc graphs. Thanks, Jaswanth. P.

html whitelist admin config fastqc • 323 views
ADD COMMENTlink modified 8 months ago by Jennifer Hillman Jackson25k • written 9 months ago by jaswanth.p0
gravatar for Jennifer Hillman Jackson
8 months ago by
United States
Jennifer Hillman Jackson25k wrote:


To enable display of HTML and PDF and other sanitized datatypes resulting from a tool, add these to the Galaxy display whitelist.

The operation is within the Galaxy UI under Admin > Tool Management > Manage whitelist.

You can also do this line-command here:

Thanks! Jen, Galaxy team

ADD COMMENTlink written 8 months ago by Jennifer Hillman Jackson25k
gravatar for skhan
9 months ago by
skhan40 wrote:

If you run fastqc in terminal at e.g. fastqc --outdir ~ file.fastq.gz it will create, in your home directory (~), an html file that you can open with your favourite web browser to view graphs, as well as a .zip archive that you can extract and view .PNG image files using your favourite image viewer program (such as the default Photo Viewer program on Windows PCs).

On Galaxy, a modern web browser like Chrome will be able to display the graphics (PNG files) in the "...: Webpage" file generated.

ADD COMMENTlink modified 9 months ago • written 9 months ago by skhan40
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