Question: Visualisation of Fastqc charts
gravatar for jaswanth.p
17 days ago by
jaswanth.p0 wrote:

Requesting to let me know the plugin to be installed to visualize fastqc graphs. Thanks, Jaswanth. P.

ADD COMMENTlink modified 15 days ago by Jennifer Hillman Jackson24k • written 17 days ago by jaswanth.p0
gravatar for Jennifer Hillman Jackson
15 days ago by
United States
Jennifer Hillman Jackson24k wrote:


To enable display of HTML and PDF and other sanitized datatypes resulting from a tool, add these to the Galaxy display whitelist.

The operation is within the Galaxy UI under Admin > Tool Management > Manage whitelist.

You can also do this line-command here:

Thanks! Jen, Galaxy team

ADD COMMENTlink written 15 days ago by Jennifer Hillman Jackson24k
gravatar for skhan
17 days ago by
skhan30 wrote:

If you run fastqc in terminal at e.g. fastqc --outdir ~ file.fastq.gz it will create, in your home directory (~), an html file that you can open with your favourite web browser to view graphs, as well as a .zip archive that you can extract and view .PNG image files using your favourite image viewer program (such as the default Photo Viewer program on Windows PCs).

On Galaxy, a modern web browser like Chrome will be able to display the graphics (PNG files) in the "...: Webpage" file generated.

ADD COMMENTlink modified 17 days ago • written 17 days ago by skhan30
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