Question: (Closed) RIP-SEQ or RNA-SEQ
gravatar for ruby.boateng
9 months ago by
ruby.boateng0 wrote:


I am new to galaxy as well as RNA seq analysis. Although, I did not perform RNA seq, I am trying to follow that same pipeline to analyze my RIP-seq data. In brief, I extract RNAs from IPs and I am interested in finding the mRNA transcripts. My sequences are already aligned to the reference genome. It there a way for me to perform PCA to see the overlap of transcripts between samples? The PCA I have done somehow just overlaps the samples but I am interested in overlapping the transcripts to see how similar the transcripts are in different samples. Thanks in advance!

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ADD COMMENTlink written 9 months ago by ruby.boateng0

Hello ruby.boateng!

Questions similar to yours can already be found at:

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ADD REPLYlink written 8 months ago by Jennifer Hillman Jackson25k
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