Question: How can I annotate a vcf file created with Freebayes with rs#
gravatar for keeley.brookes
9 months ago by
keeley.brookes0 wrote:

Hi All,

I have a vcf file created in freebayes (v.0.0.2), and I would like to annotate the file with rs# id so I can filter them out and obtain just a list of novel variants. I have tried to use VCF-VCF intersect but I don't think it has given me what I want. The final aim is to create a file with just novel G-A variants in. Does anyone have any ideas of how I can do this please? Thanks

snpeff dbsnp annovar vcf annotate • 389 views
ADD COMMENTlink modified 9 months ago by Jennifer Hillman Jackson25k • written 9 months ago by keeley.brookes0
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