Question: How can I annotate a vcf file created with Freebayes with rs#
gravatar for keeley.brookes
17 days ago by
keeley.brookes0 wrote:

Hi All,

I have a vcf file created in freebayes (v.0.0.2), and I would like to annotate the file with rs# id so I can filter them out and obtain just a list of novel variants. I have tried to use VCF-VCF intersect but I don't think it has given me what I want. The final aim is to create a file with just novel G-A variants in. Does anyone have any ideas of how I can do this please? Thanks

ADD COMMENTlink modified 16 days ago by Jennifer Hillman Jackson24k • written 17 days ago by keeley.brookes0
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 68 users visited in the last hour