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Question: Subsetting or Splitting collections
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gravatar for tamhok
10 months ago by
tamhok • 0
tamhok • 0 wrote:

Is there an easy way (besides filter list) to separate a collection into multiple collections based on keywords in the element identifier? I.e. if I have the following element identifiers in my collection

Pos_1,Pos_2,Neg_1,Neg_2,Ctrl_1,Ctrl_2

Is there some tool or method that allows me to create three new collections with the following:

Collection 1: Pos_1, Pos_2

Collection 2: Neg_1, Neg_2

Collection 3: Ctrl_1,Ctrl_2

Thanks,

Hok Hei Tam
eject filter collections split dataset • 443 views
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modified 10 months ago by Jennifer Hillman Jackson ♦ 25k • written 10 months ago by tamhok • 0
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gravatar for Jennifer Hillman Jackson
10 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

This exact operation has not yet been implemented at Galaxy Main https://usegalaxy.org but is under consideration for development. I made a request to add a related tool that should be useful (but this might be what you already mean by the "filter list" method). If you don't want to filter with a file, you could start over by building smaller distinct collections and merging these later as needed during an analysis.

This ticket contains more details, including linked development tickets: https://github.com/galaxyproject/usegalaxy-playbook/issues/75

Collection operations tutorial: https://galaxyproject.org/tutorials/collections/

Thanks! Jen, Galaxy team
ADD COMMENT • link modified 10 months ago • written 10 months ago by Jennifer Hillman Jackson ♦ 25k
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