Question: Tuxedo_Custome build genome
gravatar for vsafavi
10 weeks ago by
vsafavi0 wrote:

I have uploaded tomato genome in GFF3 and FASTA format in galaxy. However, when I run Tuxedo, my genome is not shown in the list of genomes. The GFF3 file is shown in the input dataset. How can I set it as reference genome?


ADD COMMENTlink modified 10 weeks ago by Jennifer Hillman Jackson24k • written 10 weeks ago by vsafavi0
gravatar for Jennifer Hillman Jackson
10 weeks ago by
United States
Jennifer Hillman Jackson24k wrote:


The genome dataset probably needs to have the datatype fasta assigned. Then when selecting the genome on the tool form, choose the option to pick one from the history (instead of a built-in index).

The annotation dataset sounds like it already has the gff3 datatype assigned so is appearing in the appropriate form locations.


Specifically, see the help in this section for how-to:

Tutorials, including those for RNA-seq:

Thanks! Jen, Galaxy team

ADD COMMENTlink written 10 weeks ago by Jennifer Hillman Jackson24k
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