Question: Tuxedo_Custome build genome
0
gravatar for vsafavi
8 months ago by
vsafavi0
vsafavi0 wrote:

I have uploaded tomato genome in GFF3 and FASTA format in galaxy. However, when I run Tuxedo, my genome is not shown in the list of genomes. The GFF3 file is shown in the input dataset. How can I set it as reference genome?

Thanks,

ADD COMMENTlink modified 8 months ago by Jennifer Hillman Jackson25k • written 8 months ago by vsafavi0
0
gravatar for Jennifer Hillman Jackson
8 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

The genome dataset probably needs to have the datatype fasta assigned. Then when selecting the genome on the tool form, choose the option to pick one from the history (instead of a built-in index).

The annotation dataset sounds like it already has the gff3 datatype assigned so is appearing in the appropriate form locations.

FAQs: https://galaxyproject.org/support/

Specifically, see the help in this section for how-to: https://galaxyproject.org/support/#getting-inputs-right

Tutorials, including those for RNA-seq: https://galaxyproject.org/learn/

Thanks! Jen, Galaxy team

ADD COMMENTlink written 8 months ago by Jennifer Hillman Jackson25k
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