Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: Tuxedo_Custome build genome
0
gravatar for vsafavi
10 months ago by
vsafavi • 0
vsafavi • 0 wrote:

I have uploaded tomato genome in GFF3 and FASTA format in galaxy. However, when I run Tuxedo, my genome is not shown in the list of genomes. The GFF3 file is shown in the input dataset. How can I set it as reference genome?

Thanks,
fasta genome datatype custom rna-seq • 285 views
ADD COMMENT • link •
modified 10 months ago by Jennifer Hillman Jackson ♦ 25k • written 10 months ago by vsafavi • 0
0
gravatar for Jennifer Hillman Jackson
10 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

The genome dataset probably needs to have the datatype fasta assigned. Then when selecting the genome on the tool form, choose the option to pick one from the history (instead of a built-in index).

The annotation dataset sounds like it already has the gff3 datatype assigned so is appearing in the appropriate form locations.

FAQs: https://galaxyproject.org/support/

Specifically, see the help in this section for how-to: https://galaxyproject.org/support/#getting-inputs-right

Tutorials, including those for RNA-seq: https://galaxyproject.org/learn/

Thanks! Jen, Galaxy team
ADD COMMENT • link written 10 months ago by Jennifer Hillman Jackson ♦ 25k
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 168 users visited in the last hour