Question: C: Bias Correction : Locally cached human reference sequence data
gravatar for a.morris
9 weeks ago by
a.morris10 wrote:

Hello Jennifer, your most answer correctly identified a problem with Cuffdiff returning red boxes last week. However this week I am using Cufflinks. Under the Biass correction option (Yes) and cached Ref sequence data, the using reference genome only returns "no options available. Last time I used Cuffdiff, hg19 was detected and entered.

cufflinks • 82 views
ADD COMMENTlink modified 9 weeks ago by Jennifer Hillman Jackson23k • written 9 weeks ago by a.morris10

Just found out that the Cufflinks detects only hg_g1k_v37 and not hg19, which solves the problem

ADD REPLYlink written 9 weeks ago by a.morris10
gravatar for Jennifer Hillman Jackson
9 weeks ago by
United States
Jennifer Hillman Jackson23k wrote:

Hi Alex,

Ok, glad you discovered what that problem was. The database metadata assigned to the input acts as a filter for the content of that option's pull down menu (and the genome select menu for certain other tools as well).

Thanks for the follow-up! Jen, Galaxy team

ADD COMMENTlink written 9 weeks ago by Jennifer Hillman Jackson23k
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