Question: SHRiMP2 aligner as part of NGS: Mapping
0
gravatar for jjbennet
10 months ago by
jjbennet0
jjbennet0 wrote:

Is there anyway SHRiMP2 can be put on the public galaxy server as a part of the NGS: Mapping tools?

rna-seq galaxy • 270 views
ADD COMMENTlink modified 10 months ago by Jennifer Hillman Jackson25k • written 10 months ago by jjbennet0
0
gravatar for Jennifer Hillman Jackson
10 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

This tool is not wrapped in the Main Tool Shed, so it is not on many public Galaxy servers. That said, I think it is still on the Orione server - you can check here and contact them about status if you have questions (technical or usage): https://galaxyproject.org/public-galaxy-servers/orione/

Alternative public servers can also be reviewed here https://galaxyproject.org/public-galaxy-servers or here https://galaxyproject.org/blog/2017-10-public-galaxy-dashboard/.

If you choose to wrap the tool yourself (or know someone that will), the contribution would be welcome in the Tool Shed, for use in your own local, cloud, or docker Galaxy.

Thanks! Jen, Galaxy team

ADD COMMENTlink written 10 months ago by Jennifer Hillman Jackson25k
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