SHRiMP2 aligner as part of NGS: Mapping

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Question: SHRiMP2 aligner as part of NGS: Mapping

13 months ago by

jjbennet • 0

jjbennet • 0 wrote:

Is there anyway SHRiMP2 can be put on the public galaxy server as a part of the NGS: Mapping tools?

rna-seq galaxy • 345 views

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modified 13 months ago by Jennifer Hillman Jackson ♦ 25k • written 13 months ago by jjbennet • 0

13 months ago by

Jennifer Hillman Jackson ♦ 25k

United States

Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

This tool is not wrapped in the Main Tool Shed, so it is not on many public Galaxy servers. That said, I think it is still on the Orione server - you can check here and contact them about status if you have questions (technical or usage): https://galaxyproject.org/public-galaxy-servers/orione/

Alternative public servers can also be reviewed here https://galaxyproject.org/public-galaxy-servers or here https://galaxyproject.org/blog/2017-10-public-galaxy-dashboard/.

If you choose to wrap the tool yourself (or know someone that will), the contribution would be welcome in the Tool Shed, for use in your own local, cloud, or docker Galaxy.

Thanks! Jen, Galaxy team

ADD COMMENT • link written 13 months ago by Jennifer Hillman Jackson ♦ 25k

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