Question: Workflow is not initiating a job in my history
0
gravatar for sedought
8 months ago by
sedought0
sedought0 wrote:

Hi All,

I'm trying to use a a workflow to do the last two steps of my analysis (map with bowtie for illumina and feature counts).

When I run the workflow it says its been executed but nothing appears in the history pane and it doesn't appear to be running bowtie or feature counts.

Any suggestions would be greatly appreciated!

Thank you

Sabrina

rna-seq • 336 views
ADD COMMENTlink modified 8 months ago by katherine.whybourne0 • written 8 months ago by sedought0

Do you by chance have multiple browser windows open for Galaxy? Jobs can end up in different histories than the intended target when this is done. Open Saved Histories to find where the jobs are.

Let us know if you find them, and if not, we can look into this more.

ADD REPLYlink modified 8 months ago • written 8 months ago by Jennifer Hillman Jackson25k

Hello,

I have been experiencing a similar issue for about a day now. The jobs do not appear to be moving into separate histories. Using individual programs works for me (i.e. TopHat not in a workflow), but my workflows do not.

Thank you

ADD REPLYlink written 8 months ago by rsk890
1

Ok, the time frame is important, thank you for all posting. We updated the Galaxy Main server https://usegalaxy.org on Tuesday to the upcoming release and are integration testing. "New" problems need followup.

Executing a workflow seems to not be creating output jobs/datasets, in any history (same or new). Am following up with the developers. Updates will follow.

ADD REPLYlink written 8 months ago by Jennifer Hillman Jackson25k

Update: Still an issue, follow progress here https://github.com/galaxyproject/usegalaxy-playbook/issues/47

We will close out this post with a final answer once completely resolved.

ADD REPLYlink written 8 months ago by Jennifer Hillman Jackson25k
0
gravatar for Jennifer Hillman Jackson
8 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Update:

The workflow launching problem is now resolved.

Please note that IF you are sending your workflow output to a new history, that history will need to be navigated to. Use the History menu (gear icon) > Saved Histories.

Thanks to all who reported the problem and Dannon for the fix! Jen, Galaxy team

Reference: https://github.com/galaxyproject/usegalaxy-playbook/issues/47

ADD COMMENTlink written 8 months ago by Jennifer Hillman Jackson25k
0
gravatar for katherine.whybourne
8 months ago by
katherine.whybourne0 wrote:

I am still having trouble...still cannot run

ADD COMMENTlink written 8 months ago by katherine.whybourne0
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