I'm trying to use a a workflow to do the last two steps of my analysis (map with bowtie for illumina and feature counts).
When I run the workflow it says its been executed but nothing appears in the history pane and it doesn't appear to be running bowtie or feature counts.
Any suggestions would be greatly appreciated!
Do you by chance have multiple browser windows open for Galaxy? Jobs can end up in different histories than the intended target when this is done. Open Saved Histories to find where the jobs are.
Let us know if you find them, and if not, we can look into this more.
I have been experiencing a similar issue for about a day now. The jobs do not appear to be moving into separate histories. Using individual programs works for me (i.e. TopHat not in a workflow), but my workflows do not.
Ok, the time frame is important, thank you for all posting. We updated the Galaxy Main server https://usegalaxy.org on Tuesday to the upcoming release and are integration testing. "New" problems need followup.
Executing a workflow seems to not be creating output jobs/datasets, in any history (same or new). Am following up with the developers. Updates will follow.
Update: Still an issue, follow progress here https://github.com/galaxyproject/usegalaxy-playbook/issues/47
We will close out this post with a final answer once completely resolved.