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Question: I can't find FreeBayes
1
gravatar for skhan
14 months ago by
skhan • 40
skhan • 40 wrote:

Hi all,

Up until yesterday I was using FreeBayes and all was well. Today I can't find FreeBayes in Galaxy. I have a few workflows that use FreeBayes and these workflows no longer run either.

Does anyone know what happened to FreeBayes? Has it been deprecated? Is if momentarily offline? Or am I experiencing a bug?

Thanks,

Skhan
tool snp freebayes • 481 views
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modified 14 months ago • written 14 months ago by skhan • 40
0
gravatar for Nate Coraor
14 months ago by
Nate Coraor ♦ 3.2k
United States
Nate Coraor ♦ 3.2k wrote:

Interesting, it's not showing up for me either, but it's loaded. I'm working on this, but for the moment, you can go directly to the tool with the URL https://usegalaxy.org/?tool_id=freebayes, and then using the "Versions" menu at the top to pick 1.0.2.29-3.
ADD COMMENT • link written 14 months ago by Nate Coraor ♦ 3.2k

This has been fixed.

ADD REPLY • link written 14 months ago by Nate Coraor ♦ 3.2k
0
gravatar for skhan
14 months ago by
skhan • 40
skhan • 40 wrote:

Thanks Nate. I used the tool from that link but my results (the position matches listed in the VCF, using hg19) don't agree with what I was getting before. I'll troubleshoot on my end. Just and FYI.
ADD COMMENT • link written 14 months ago by skhan • 40

You might want to verify that you are using the same version of FreeBayes as before.

ADD REPLY • link written 14 months ago by Nate Coraor ♦ 3.2k
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