Question: I can't find FreeBayes
1
gravatar for skhan
10 weeks ago by
skhan20
skhan20 wrote:

Hi all,

Up until yesterday I was using FreeBayes and all was well. Today I can't find FreeBayes in Galaxy. I have a few workflows that use FreeBayes and these workflows no longer run either.

Does anyone know what happened to FreeBayes? Has it been deprecated? Is if momentarily offline? Or am I experiencing a bug?

Thanks,

Skhan

tool snp freebayes • 123 views
ADD COMMENTlink modified 10 weeks ago • written 10 weeks ago by skhan20
0
gravatar for Nate Coraor
10 weeks ago by
Nate Coraor3.1k
United States
Nate Coraor3.1k wrote:

Interesting, it's not showing up for me either, but it's loaded. I'm working on this, but for the moment, you can go directly to the tool with the URL https://usegalaxy.org/?tool_id=freebayes, and then using the "Versions" menu at the top to pick 1.0.2.29-3.

ADD COMMENTlink written 10 weeks ago by Nate Coraor3.1k

This has been fixed.

ADD REPLYlink written 10 weeks ago by Nate Coraor3.1k
0
gravatar for skhan
10 weeks ago by
skhan20
skhan20 wrote:

Thanks Nate. I used the tool from that link but my results (the position matches listed in the VCF, using hg19) don't agree with what I was getting before. I'll troubleshoot on my end. Just and FYI.

ADD COMMENTlink written 10 weeks ago by skhan20

You might want to verify that you are using the same version of FreeBayes as before.

ADD REPLYlink written 10 weeks ago by Nate Coraor3.1k
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