Question: (Closed) krona from mothur results
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gravatar for itiago
11 weeks ago by
itiago0
itiago0 wrote:

Hi I'm trying to produce a krona graph from a taxonomy file from mothur, but galaxy platorm does not identify my files as taxonomy files from mothur. Could you please help me? What is the file that I can use? I uploaded *wang.tax.summary and *.wang.taxonomy, but none was identified by galaxy platform...

I was trying to mimic what is explained in

https://galaxyproject.github.io/training-material/topics/metagenomics/tutorials/mothur-miseq-sop/tutorial.html,

but I don't find any of these selection sets:

Visualize with Krona with the following parameters “input file” to taxonomy output from Classify.otu (collection) Set Is this output from mothur? to yes

Thank you for any help.

krona mothur • 130 views
ADD COMMENTlink written 11 weeks ago by itiago0

Hello itiago!

Questions similar to yours can already be found at:

We have closed your question to allow us to keep similar content in the same thread.

If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.

Cheers!

PS: Please see the advice in the other post for using externally produce data with this tool set
ADD REPLYlink written 11 weeks ago by Jennifer Hillman Jackson23k
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