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• Convert Kraken data to Galaxy taxonomy - missing database (usegalaxy)?
  Hi, I'm trying to use Convert Kraken data to Galaxy taxonomy representation (Galaxy Version 1.1),...
• Taxbuilder Executable
  taxonomy/gi2taxonomy.py gives me this error: /bin/sh: taxBuilder: command not found what is thi...
• Fetch taxonomic representation tool error - missing lines
  Hello, I have been using the Fetch taxonomic representation tool from Galaxy online to retrieve ...
• mothur silva.nr_v132.align datasets etc
  Good morning, I am trying to run the mothur command align.seqs using the NGS: Mothur tool. I kee...
• Why can't I get gi2taxonomy to work as expected? -- Deprecated tool Fetch taxonomic representation (Galaxy Version 1.1.0)
  Hi, We have "**Fetch taxonomic representation (Galaxy Version 1.1.0)**" installed on our galaxy ...
• Retrieve Taxonomic Information
  Hi Galaxy, As far as I understand, the Kraken databases are in the process of being switched fro...
• krona from mothur results
  Hi I'm trying to produce a krona graph from a taxonomy file from mothur, but galaxy platorm does ...
• Mothur OTU cluster problem in Usegalaxy ; I don't have training data set
  when i am trying to work on meta genomics using Galaxy server, i am unable to perform Classify.se...
• Fetch Taxonomic Representation and Kraken
  Hello, I need to do a quick analysis of taxonomy for a small set of Illumina reads (~1200), and ...
• (No Subject)
  I am new to Galaxy and am using it for analysis of BLAST results and phylogeny. I have uploaded a...
• get krona graph from mothur output
  The excel template you get from Krona tools is about categories of granola. The instructions the...
• Adding a new tool
  I have a new local install of Galaxy on my own server and I'm trying to define a new tool for a c...
• Is it possible to upload SnpEff databases to Galaxy?
  I have created a database with SnpEff 4.0, which should be compatible with Galaxy. Is it possible...
• Lefse data adjusting to get a meaningful plot result
  Hi all I have a little question that I will try to explain as far as possible. So basically I ha...
• what happened to the tools from gi2taxonomy?
  Hi, In my bioinformatics classes, there is an exercise in which the students need to use the fol...
• Retrieve Taxonomic Information
  Hi, I see that right now the Kraken reference data at http://usegalaxy.org #1691 says "Closed". D...
• How to add a bacterial genome to Galaxy database?
  I have my ChIP-Seq data on Galaxy but can't map it because the bacterial genome that I am working...
• rearrange columns with Galaxy
  Hello, I have the following GFF file: ##gff-version 3 #!gff-spec-version 1.21 #!processor ...