Question: Galaxy Docker problem with Database execution
1
gravatar for niras.94
8 months ago by
niras.9430
niras.9430 wrote:

Hello,

I am trying to setup a Galaxy Docker instance but i am getting this error on database startup:

"Connection refused Is the server running on host "localhost" (127.0.0.1) and accepting TCP/IP connections on port 5432? could not connect to server: Network is unreachable Is the server running on host "localhost" (::1) and accepting TCP/IP connections on port 5432?"

Have you any idea??

Thanks a lot,

Dimitris

ADD COMMENTlink modified 8 months ago by danielsauceda60 • written 8 months ago by niras.9430

I personally have not tried Galaxy Docker but here's a couple of things.

  1. What version of Postgresql did you install
  2. what OS are using?
ADD REPLYlink written 8 months ago by danielsauceda60
1

I am using Postegresql 9.3 and Ubuntu 14.04.

ADD REPLYlink written 8 months ago by niras.9430

Are you positive that your postgres is running.

sudo service postgresql status

Also verify that in file /etc/postgresql/9.3/main/postgresql.conf has the following line

port = 5432
ADD REPLYlink written 8 months ago by danielsauceda60

Postgresql automatically starts when Galaxy Docker is running, so it is not installed locally on pc. The port is 5432 and the .conf file is placed in Galaxy Docker folder.

ADD REPLYlink written 8 months ago by niras.9430
1
gravatar for danielsauceda
8 months ago by
Texas A&M
danielsauceda60 wrote:

Yes i have recreated your problem.

If you are using docker in interactive mode postgres does not automatically startup. by running sudo service postgresql status i was able to see that my postgres was indeed not started.

Hence i simply ran sudo service postgresql status and followed that up with ./run.sh in galaxy-central an Tada.

Worked just fine.

If this works for you let me know.

ADD COMMENTlink written 8 months ago by danielsauceda60
1

Solved, Thanks a lot!

ADD REPLYlink written 8 months ago by niras.9430

don't forget accept solution :)

ADD REPLYlink written 8 months ago by danielsauceda60
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