Question: Rstudio connecting to Galaxy
0
gravatar for Mic
3.3 years ago by
Mic • 70
Australia
Mic • 70 wrote:

Hello,

I used the following command on the server to start Galaxy docker:

    $ sudo docker run -p 8080:80 -p 8800:8800 --privileged=true -e DOCKER_PARENT=True -v /var/run/docker.sock:/var/run/docker.sock -v /home/cm/galaxy_storage/:/export/ -e "host=0.0.0.0" bgruening/galaxy-exom-seq

However, How to conect RStudio from my desktop to the Galaxy server?

Thank you in advance.

Mic

galaxy docker rstudio • 1.3k views
ADD COMMENT • link • modified 3.3 years ago by Bjoern Gruening ♦ 5.1k • written 3.3 years ago by Mic • 70
1
gravatar for Bjoern Gruening
3.3 years ago by
Bjoern Gruening ♦ 5.1k
Germany
Bjoern Gruening ♦ 5.1k wrote:

Hi Mic,

RStudio is integrated as Docker Image into Galaxy (Galaxy 15.07, the upcoming release). So you can not connect a host instance to Galaxy, but Galaxy will spin up it's own container.

Hope this helps,

Bjoern

ADD COMMENT • link written 3.3 years ago by Bjoern Gruening ♦ 5.1k

Hi Bjoern,

Thank you. I am looking for you docker-galaxy-stable 15.07 image.

Mic

ADD REPLY • link written 3.3 years ago by Mic • 70
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