Question: RNA Structure (in silico) prediction
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gravatar for kkr5169
3 months ago by
kkr51690
kkr51690 wrote:

When I use the RNA Structure Prediction to predict structures from my list of RNA ids, the job finishes and says the gene IDs I put into the .txt folder are 'not in the data of sequences'. The reference transcriptome (.fasta) is from Plasmodium yoelii. When I search the reference transcriptome file for the transcript IDs, they are present, so why can't the Structure prediction find the transcript IDs? Do I need to format the list of IDs differently? I currently have each transcript ID with one line per ID, as indicated on the page... Does the reference file need to be reformatted?

Has anyone else had this issue?

ADD COMMENTlink written 3 months ago by kkr51690

Which tool have you used or which Galaxy instance?

ADD REPLYlink written 3 months ago by Bjoern Gruening4.8k
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