Question: How to group 4 bowtie files to visualise altogether from galaxy in UCSC genome browser?
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gravatar for rajesh.somasundaram19
4 months ago by
rajesh.somasundaram190 wrote:

Hi, How to group 4 bowtie files to visualise altogether from galaxy in UCSC genome browser?

Thank you, Regards, Raj

bowtie group • 123 views
ADD COMMENTlink modified 4 months ago by Jennifer Hillman Jackson23k • written 4 months ago by rajesh.somasundaram190
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gravatar for Jennifer Hillman Jackson
4 months ago by
United States
Jennifer Hillman Jackson23k wrote:

Hello,

Three choices:

1 - Merge the BAMs together with NGS: SAMtools > Merge BAM Files

2 - Load the BAMs as tracks at UCSC, then group them together into a track hub. See the help at UCSC for how to do this. If you have trouble, UCSC support can help with the specifics through though their google group. http://genome.ucsc.edu >> http://genome.ucsc.edu/goldenPath/help/hgTrackHubHelp.html

3 - Consider viewing the data within Galaxy's visualization tool Trackster. Dataset tracks can be dragged into groups and external tracks can be loaded into Galaxy and viewed along with Galaxy natively generated data.

Hope this helps!

ADD COMMENTlink written 4 months ago by Jennifer Hillman Jackson23k
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