Question: How to group 4 bowtie files to visualise altogether from galaxy in UCSC genome browser?
0
gravatar for rajesh.somasundaram19
6 days ago by
rajesh.somasundaram190 wrote:

Hi, How to group 4 bowtie files to visualise altogether from galaxy in UCSC genome browser?

Thank you, Regards, Raj

bowtie group • 59 views
ADD COMMENTlink modified 6 days ago by Jennifer Hillman Jackson22k • written 6 days ago by rajesh.somasundaram190
0
gravatar for Jennifer Hillman Jackson
6 days ago by
United States
Jennifer Hillman Jackson22k wrote:

Hello,

Three choices:

1 - Merge the BAMs together with NGS: SAMtools > Merge BAM Files

2 - Load the BAMs as tracks at UCSC, then group them together into a track hub. See the help at UCSC for how to do this. If you have trouble, UCSC support can help with the specifics through though their google group. http://genome.ucsc.edu >> http://genome.ucsc.edu/goldenPath/help/hgTrackHubHelp.html

3 - Consider viewing the data within Galaxy's visualization tool Trackster. Dataset tracks can be dragged into groups and external tracks can be loaded into Galaxy and viewed along with Galaxy natively generated data.

Hope this helps!

ADD COMMENTlink written 6 days ago by Jennifer Hillman Jackson22k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 127 users visited in the last hour