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Question: How to do multiple shuffling using Galaxy (ShuffleBed)?
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gravatar for annamariabugaj
15 months ago by
annamariabugaj • 0
annamariabugaj • 0 wrote:

I would like to perform enrichment analysis and I need to shuffle data 1000 times and then intersect the 1000 outputs with particular genomic features - is there any way I can do it using Galaxy?

bedtools • 376 views
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modified 15 months ago by Jennifer Hillman Jackson ♦ 25k • written 15 months ago by annamariabugaj • 0
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gravatar for Jennifer Hillman Jackson
15 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Try using a dataset collection. You can group the genomes into a collection then run through multiple tools in batch, within a workflow or outside of one.

This is how to use collections: https://galaxyproject.org/tutorials/collections/

Thanks, Jen, Galaxy team
ADD COMMENT • link written 15 months ago by Jennifer Hillman Jackson ♦ 25k
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