Question: Conditional Cluster/Merge
0
Agnes Williams • 10 wrote:
Hi,
I have a dataset of some 1000 individuals and I'd like to merge
consecutive
intervals within 50kb that are within an individual. I know how to do
it per
person (first filter an individual into one file, and use the
"cluster"
function at the "operate on genomic intervals". But to do this in
1000
times is obviously not ideal, unless it can be automated. Either that,
or
perform cluster/merge with an additional condition (only merge for
intervals
from the same individual). I'm an experimentalist without programming
background, so I rely on using galaxy to perform my analyses. I'm
wondering
if you have any suggestion for this?
many thanks in advance!
AW
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modified 8.1 years ago
by
Jennifer Hillman Jackson ♦ 25k
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written
8.2 years ago by
Agnes Williams • 10
