I have got Mpileup data. I wish to further understand SNP effect using snpeff. Unfortunately, in Galaxy when i select reference genome from history i am required to fill "Additional annotations" and "Non-coding and regulatory annotation". I wonder if anyone can guide me through this.
My reference sequence is Mycobacterium tuberculosis"H37Rv" in fasta format and i am working with illumina whole genome sequence data.
I am using galaxy for the first time.